species:   Rhsol
pid:       PID0606
parent:    Rhi-milR-177
paralog:   
locus:     KB317767.1:1176-1289
matures:   ['UUUGGGCGCAAUGGGAGAGACU', 'UCUGACUUCCCCCCAAAUC']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317767.1:1176-1289

0 out of bounds
12 alignments
10 proper strand
3 stranded perfect matches

                  *********************************************                                                   
UAUUGCACAACAACACCGGGUUUGGGCGCAAUGGGAGAGACUAGUCUGACUUCCCCCCAAAUCCAAUCAGGAUGGGCUGCCCCAUCCUCCCGCACUCAUACUCCUGCCCCUGCG
....(((..........(((((((((......((((((((....)))...))))))))))))))....((((((((....))))))))...(((..........)))...))).
--------------------UUUGGGCGCAAUGGGAGAGACU------------------------------------------------------------------------ l=22 a=0 c
--------------------------------------------UCUGACUUCCCCCCAAAUC--------------------------------------------------- l=19 a=0 c*
---------------------UUGGGCGCAAUGGGAGAGACUAGU--------------------------------------------------------------------- l=24 a=2 ma
--------------------------------------------UCUGACUUCCCCCCAAAUC--------------------------------------------------- l=19 a=0 ma*

--------------------UUUGGGCGCgAUGGGAGAGAC------------------------------------------------------------------------- l=21 a=1 
--------------------UUUGGGCGCAAUGGGAGAGACUAa---------------------------------------------------------------------- l=24 a=1 
--------------------UUUGGGCGCAAUGGGAGAGACUAG---------------------------------------------------------------------- l=24 a=1 
---------------------UUGGGCGCAAUGGGAGAGACUAGU--------------------------------------------------------------------- l=24 a=2 (ma)
---------------------UUGGGCGCAAUGGGAGAaACUAGU--------------------------------------------------------------------- l=24 a=1 
---------------------UUGGGCGCAAUGGGAGgGACUAGUCU------------------------------------------------------------------- l=26 a=1 
----------------------UGGGCGCAAUGGGAGAGACUAaUC-------------------------------------------------------------------- l=24 a=1 
----------------------UGGGCGCAAUGGGAGgGACUAGUC-------------------------------------------------------------------- l=24 a=2 

mb-00010
ax-1001011
ku-01
ss-111111101100
fn-011
